Visualization Guide¶
This guide covers visualization of SPIMquant results.
Viewing Results¶
Neuroimaging Software¶
View 3D results in:
- FSLeyes:
fsleyes output.nii.gz - ITK-SNAP: Interactive segmentation and visualization
- 3D Slicer: Advanced 3D visualization
- Imaris: High-resolution microscopy visualization
Statistical Heatmaps¶
Group analysis generates heatmaps showing statistical significance across brain regions.
Quality Control¶
Review registration quality and segmentation results.
Custom Visualizations¶
Create custom visualizations using Python: