Basic Registration Tutorial

This tutorial covers basic template registration with SPIMquant.

What You'll Learn

• Load SPIM data in BIDS format
• Perform deformable registration to a template
• Visualize registration results
• Interpret output files

Prerequisites

• SPIMquant installed
• Sample BIDS dataset
• Basic familiarity with neuroimaging

Step 1: Prepare Data

Step 2: Run Registration

Step 3: Validate Results

Next Steps

• Atlas Quantification
• Custom Templates